SNP Profiles matching PA 156 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
1._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
2._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
3._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
4._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
5._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
6._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
7._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
8._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
9._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
10._RUQ_1531	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
11._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
12._PA_186_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
13._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	_	AA	GG	CC	AG
14._RUQ_1531	_	AG	GG	CT	_	_	_	TT	_	_	_	_	CC	AG
15._EET_400_[ECU]	CC	AG	GG	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
16._RUQ_1567	_	AG	GG	CT	_	_	_	TT	_	_	_	_	CC	AG
17._PA_184_[PER]	CC	AG	CG	CT	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
1._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
2._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
3._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
4._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
5._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
6._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
7._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
8._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
9._GC-05-137-3-39	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
10._RUQ_1531	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
11._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
12._PA_186_[PER]	CC	AA	CG	TT	CC	GG	-	AA	TT	CC	CG	TT	CC	AC
13._PA_156_[PER]	CC	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC
14._RUQ_1531	_	_	_	_	CC	GG	GG	_	TT	CC	CG	TT	CC	AC
15._EET_400_[ECU]	CT	AA	CG	TT	CC	GG	GG	AA	TT	CC	GG	TT	CC	AC
16._RUQ_1567	_	_	_	_	CC	GG	GG	_	TT	AC	CG	TT	CT	CC
17._PA_184_[PER]	CT	AA	CG	CC	CC	GG	-	AA	TT	AC	CG	TT	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
1._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
2._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
3._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
4._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
5._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
6._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
7._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
8._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
9._GC-05-137-3-39	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
10._RUQ_1531	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
11._PA_156_[PER]	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
12._PA_186_[PER]	AA	GG	AA	CC	AA	CC	AA	GG	AC	AT	GG	X_X	X_X	X_X
13._PA_156_[PER]	AA	GG	AA	CC	AA	_	AA	GG	AC	AT	GG	X_X	X_X	X_X
14._RUQ_1531	AA	_	AA	CC	AA	CC	AA	GG	AC	_	_	X_X	X_X	X_X
15._EET_400_[ECU]	AA	GG	AA	CC	AA	CC	AC	GG	AC	AT	GG	X_X	X_X	X_X
16._RUQ_1567	AA	_	AA	CC	AA	CC	AA	GG	AC	_	_	X_X	X_X	X_X
17._PA_184_[PER]	AA	GG	AA	CC	AA	-	AA	GG	AA	AT	GG	X_X	X_X	X_X

Input profile: PA_156_[PER]

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Mars Center for Cocoa Science, Brazil

Location: 5339 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 5 > FP

Dapeng Zhang, 2016

2._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 4 > FP

Dapeng Zhang, 2016

3._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 3 > FP

Dapeng Zhang, 2016

4._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 2

Dapeng Zhang, 2016

5._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

8._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

9._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

10._PA_156_[PER] RUQ_1531

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._PA_156_[PER]

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row1 C0184 28

Dapeng Zhang, 2016

12._PA_186_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 446

Dapeng Zhang, 2014

13._PA_156_[PER]

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D295 T1

Dapeng Zhang, 2016

14._PA_156_[PER] RUQ_1531

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._EET_400_[ECU]

94.9 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

16._PA_39_[PER] RUQ_1567

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._PA_184_[PER]

90.5 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 723

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25